Topics |
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Writing, art, design, and visualization |
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A Klein, E Klein.
Ellora time-lapse. (2004-). |
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A Klein.
Engram: A Systematic Approach to Optimize Keyboard Layouts for Touch Typing, With Example for the English Language. Preprints 2021030287 (2021). doi: doi.org/10.20944/preprints202103.0287.v1 NOTE: Layout superseded by Engram version 2 |
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A Klein, KA Klein.
Birds on Chairs (12 illustrated short stories). Chicken in a Snowstorm Press (2020). |
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A Klein.
The Insect's Final Dream. Chicken in a Snowstorm Press (2017). Exhibited in: Insect Dreams (collaborative edition in permanent collection). Kohler Art Library, Madison, WI (2018). and: Eating Insects Athens Art Exhibition, Athens, GA (2018). |
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A Klein, KA Klein.
Hugo Bristol and the Night Sky. Chicken in a Snowstorm Press (2013). |
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A Klein.
CTHRU: A composition-based taxonomy of information graphics. Medium (Jun 1, 2016). |
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A Klein, BA Klein.
Insects Incorporated: Database of Cultural Entomology (2016). https://culturalentomology.org/ |
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A Klein, D Klein, WM Spink.
Comprehensive photodocumentation of the Ellora Cave Temples. (2012). Ellora Cave Temple photographs on page 958, architecture textbook: AJ Ignacio (translator and editor) Semper: El estilo. Buenos Aires: Azpiazu Ediciones (2013). |
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A Keshavan, A Klein, B Cipollini. Interactive online brain shape visualization. Research Ideas and Outcomes 3: e12358 (2017). doi: doi.org/10.3897/rio.3.e12358 2015 Brainhack event |
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A Klein, N Nichols, D Haehn.
Mindboggle 2 interface: online visualization of extracted brain features with XTK. Front. Neuroinform. Conference Abstract: 5th INCF Congress of Neuroinformatics (2014). doi: doi.org/10.3389/conf.fninf.2014.08.00086 |
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A Klein, A Worth, J Tourville, B Landman, T Dal Canton, SS Ghosh, D Shattuck.
An interactive tool for constructing optimal brain colormaps. 40th Annual Meeting for the Society for Neuroscience (2010). |
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A Klein, W Bevington.
"Information visualization" entry in: Erlhoff Michael, Marshall Tim, eds. Design Dictionary: Perspectives on Design Terminology. Basel, Boston, Berlin: Birkhauser Verlag (2008). |
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A Klein.
Infovis.info information visualization database. (2008). |
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A Klein.
Data-Visual Relationships to Subject Performance and Eye Movements Research Ideas and Outcomes. 2: e8814 (2016). doi: doi.org/10.3897/rio.2.e8814 2007 NSF proposal |
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A Klein.
Relating vector ray-tracing equations for holograms of arbitrary shape and thickness. Journal of the Optical Society of America A. 25(4): 979-983 (2008). |
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MA Klug, A Klein, W Plesniak, A Kropp, B Chen.
Optics for full-parallax holographic stereograms. Proc. SPIE. 3011 (78) "Practical Holography XI" (1997). doi: doi.org/10.1117/12.271340 Thesis: Dispersion Compensation for Reflection Holography |
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BA Klein, A Klein.
Congo Rainforest permanent exhibit. Bronx Zoo, Bronx, NY (1999). |
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Mental Health Technologies |
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Y Chen, D Jarecka, SA Abraham, R Gau, E Ng, DM Low, I Bevers, A Johnson, A Keshavan, A Klein, J Clucas, Z Rosli, SM Hodge, J Linkersdörfer, H Bartsch, S Das, D Fair, D Kennedy, SS Ghosh. ReproSchema: Enhancing research reproducibility through standardized survey data collection. JMIR Preprints 21/06/2024:63343. doi:10.2196/preprints.63343 |
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K Konishcheva, B Leventhal, M Koyama, S Panda, JT Vogelstein, M Milham, A Lindner, A Klein. Accurate and efficient data-driven psychiatric assessment using machine learning. PsyArxiv Preprints (March 2024). doi:10.31234/osf.io/sekfw |
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B Mulholland, I Goodall-Halliwell, R Wallace, L Chitiz, B Mckeown, A Rastan, G Poerio, R Leech, A Turnbull, A Klein, M Milham, J Wammes, E Jefferies, J Smallwood. Patterns of ongoing thought in the real world. Consciousness and Cognition 114:103530 (September 2023). doi:10.1016/j.concog.2023.103530 Full text on BioRxiv |
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F Schoeller, A Horowitz, P Maes, A Jain, N Reggente, LC Moore, M Trousselard, A Klein, L Barca, G Pezzulo, M Allen, V Adrien, M Miller, R Salomon, G Riva, D DiLernia, M Tsakiris, C Verdonk, MA Chalah, G Dumas, K Friston. Interoceptive technologies for clinical neuroscience. Neuroscience & Biobehavioral Reviews 156:105478 (2023) doi:10.1016/j.neubiorev.2023.105478 (PsyArXiv (2022). doi:10.31234/osf.io/sqr6z) |
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BL Leventhal, K Konishcheva, E Rotenberg, A Krishnakumar, N Page, L Gares, L Almaraz, B Falissard, A Klein, AB Lindner. Functional activity, cognition, emotion and thinking scale (FACETS): Initial examination of reliability and utility. AACAP/CACAP 2022 Annual Meeting (2022). doi:10.1016/j.jaac.2022.09.226 |
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L Omberg, E Chaibub Neto, TM Perumal, A Pratap, J Adams, BR Bloem, BM Bot, M Elson, SM Goldman, MR Kellen, K Kieburtz, A Klein, MA Little, R Schneider, C Suver, C Tarolli, CM Tanner, AD Trister, J Wilbanks, ER Dorsey, LM Mangravite.
Remote smartphone monitoring of Parkinson's disease and individual response to therapy. Nature Biotechnology 40:480-487 (2022). doi: doi.org/10.1038/s41587-021-00974-9 Commentary: W Maetzler, A Pilotto. Digital assessment at home - mPower against Parkinson disease. Nature Reviews Neurology 17:661-662 (2021). doi: doi.org/10.1038/s41582-021-00567-9 |
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A Klein, J Clucas, A Krishnakumar, SS Ghosh, W Van Auken, B Thonet, I Sabram, N Acuna, A Keshavan, H Rossiter, Y Xiao, S Semenuta, A Badioli, K Konishcheva, SA Abraham, LM Alexander, KR Merikangas, J Swendsen, AB Lindner, MP Milham. Remote Digital Psychiatry for Mobile Mental Health Assessment and Therapy: MindLogger Platform Development Study. Journal of Medical Internet Research 23(11):e22369 (2021). doi: doi.org/10.2196/22369 PMID: 34762054 PMCID: PMC8663601 |
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E Schleimer, J Pearce, A Barnecut, W Rowles, A Lizee, A Klein, VJ Block, A Santaniello, A Renschen, R Gomez, A Keshavan, JM Gelfand, RG Henry, SL Hauser, R Bove. A precision medicine tool for patients with multiple sclerosis (the Open MS BioScreen): human-centered design and development. Journal of Medical Internet Research 22(7):e15605 (2020). doi: doi.org/10.2196/15605 PMID: 32628124 |
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JJ Son, JC Clucas, C White, A Krishnakumar, JT Vogelstein, MP Milham, A Klein. Thermal sensors improve wrist-worn position tracking. Nature Partner Journal Digital Medicine 2, Article number: 15 (2019). doi: doi.org/10.1038/s41746-019-0092-2 |
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HY Xu, J Stroud, RK Jozanovic, J Clucas, JJ Son, B Koo, J Schwarz, A Klein, R Busman, MP Milham. Clinical perspective on passive audio vocal measurement in the evaluation of selective mutism. Frontiers in Psychiatry 9:443 (2018). doi: doi.org/10.3389/fpsyt.2018.00443 |
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J Clucas, J Son, MP Milham, A Klein. Discriminating Groups by AudioFeature Analysis with openSMILE. Proceedings of the 3rd Symposium on Computing and Mental Health, CHI 2018, Montreal (2018). |
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J Clucas, J Son, A Krishnakumar, MP Milham, A Klein. Questionnaire response correlations to improve efficiency: preliminary evidence from the Healthy Brain Network. Proceedings of the 3rd Symposium on Computing and Mental Health, CHI 2018, Montreal (2018). |
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J Clucas, C White, B Koo, M Milham, A Klein. Assessing actimeters for inclusion in the Healthy Brain Network. bioRxiv 183772 (2017). doi: doi.org/10.1101/183772 |
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LM Alexander, J Escalera, L Ai, C Andreotti, K Febre, A Mangone, NV Potler, N Langer, A Alexander, M Kovacs, S Litke, B O'Hagan, B Bronstein, A Bui, M Bushey, V Castagna, N Camacho, E Chan, D Citera, J Clucas, S Cohen, M Eaves, B Fradera, N Grant-Villegas, G Green, C Gregory, E Hart, S Harris, C Lord, D Kahn, K Kabotyanski, K Kleinman, B Koo, E Kramer, A Margolis, KR Merikangas, J Milham, G Minniti, R Neuhaus, A Nussbaum, Y Osman, LC Parra, KR Pugh, A Racanello, A Restrepo, T Saltzman, B Septimus, R Tobe, R Waltz, A Williams, A Yeo, FX Castellanos, A Klein, T Paus, BL Leventhal, RC Craddock, HS Koplewicz, MP Milham. An open resource for transdiagnostic research in pediatric mental health and learning disorders Scientific Data. 4, Article number: 170181 (2017). doi: doi.org/10.1038/sdata.2017.181 |
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SS Ghosh, G Ciccarelli, TF Quatieri, A Klein.
Speaking one's mind: Vocal biomarkers of depression and Parkinson disease. Journal of the Acoustical Society of America. 139:2193 (2016). doi: doi.org/10.1121/1.4950530 |
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E Chaibub Neto, BM Bot, T Perumal, L Omberg, J Guinney, M Kellen, A Klein, SH Friend, AD Trister.
Personalized hypothesis tests for detecting medication response in Parkinson disease patients using iPhone sensor data. Pacific Symposium on Biocomputing. 21:273-284 (2016). PMID:26776193. doi: doi.org/10.1142/9789814749411_0026 |
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B Bot, C Suver, EC Neto, M Kellen, A Klein, C Bare, M Doerr, A Pratap, J Wilbanks, ER Dorsey, SH Friend, AD Trister.
The mPower Study, Parkinson Disease Mobile Data Collected Using ResearchKit. Scientific Data 3, Article number: 160011 (2016). doi: doi.org/10.1038/sdata.2016.11 |
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A Klein.
Crowdsourcing voice editing and quality assessment of data collected from the largest mobile phone-based research study of Parkinson disease (NIH proposal). Research Ideas and Outcomes. 2: e8848 (2016). doi: doi.org/10.3897/rio.2.e8848 |
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A Klein.
Visual Parkinson's Disease Rating Scale: A Universal Iconic Questionnaire for Epidemiological Studies in India (NIH proposal). Research Ideas and Outcomes. 2: e8834 (2016). doi: doi.org/10.3897/rio.2.e8834 |
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A Klein, SS Ghosh.
Doctor as data scientist: a high-dimensional view of health. Medium. |
Brain image processing, labeling, and informatics |
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J Son, L Ai, R Lim, T Xu, S Colcombe, AR Franco, J Cloud, S LaConte, J Lisinski, A Klein, RC Craddock. Evaluating fMRI-Based Estimation of Eye Gaze during Naturalistic Viewing. Cerebral Cortex, 30(3), pp.1171-1184 (2020). doi: doi.org/10.1093/cercor/bhz157 bioRxiv preprint |
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Y Zhao, A Klein, FX Castellanos, MP Milham. NeuroImage: Brain age prediction: cortical and subcortical shape covariation in the developing human brain. NeuroImage 202: 116149 (2019). doi: doi.org/10.1016/j.neuroimage.2019.116149 bioRxiv preprint |
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A Klein, SS Ghosh, FS Bao, J Giard, Y Hame, E Stavsky, N Lee, B Rossa, M Reuter, EC Neto, A Keshavan. Mindboggling morphometry of human brains. PLoS Computational Biology 13(3): e1005350 (2017). doi: doi.org/10.1371/journal.pcbi.1005350 |
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MP Milham, RC Craddock, A Klein. Clinically useful brain imaging for neuropsychiatry: How can we get there? Depression and Anxiety 2017:1-10 (2017). doi: doi.org/10.1002/da.22627 |
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A Klein.
A game for crowdsourcing the segmentation of BigBrain data (NIH proposal). Research Ideas and Outcomes. 2: e8816 (2016). doi: doi.org/10.3897/rio.2.e8816 |
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GI Allen, N Amoroso, C Anghel, V Balagurusamy, CJ Bare, D Beaton, R Bellotti, DA Bennett, K Boehme, PC Boutros, L Caberlotto, C Caloian, F Campbell, E Chaibub Neto, Y-C Chang, B Chen, C-Y Chen, T-Y Chien, T Clark, S Das, C Davatzikos, J Deng, D Dillenberger, RJB Dobson, Q Dong, J Doshi, D Duma, R Errico, G Erus, E Everett, DW Fardo, SH Friend, H Fröhlich, J Gan, P St George-Hyslop, SS Ghosh, E Glaab, RC Green, Y Guan, M-Y Hong, C Huang, J Hwang, J Ibrahim, P Inglese, Q Jiang, Y Katsumata, JSK Kauwe, A Klein, D Kong, R Krause, E Lalonde, M Lauria, E Lee X Lin, Z Liu, J Livingstone, BA Logsdon, S Lovestone, T-W Ma, A Malhotra, LM Mangravite, TJ Maxwell, E Merrill, J Nagorksi, A Namasivayam, M Narayan, M Naz, SJ Newhouse, TC Norman, RN Nurtdinov, Y-J Oyang, Y Pawitan, S Peng, MA Peters, SR Piccolo, P Praveen, C Priami, VY Sabelnykova, P Senger, X Shen, A Simmons, A Sotiras, G Stolovitzky, S Tangaro, A Tateo, Y-A Tung, NJ Tustison, S Varol, G Vradenburg, MW Weiner, G Xiao, L Xie, Y Xie, J Xu, H Yang, X Zhan, Y Zhou, F Zhu, H Zhu, S Zhu, Alzheimer's Disease Neuroimaging Initiative.
Crowdsourced estimation of cognitive decline and resilience in Alzheimer's disease. Alzheimer's & Dementia 12(6): 645-653 (2016). PMID: 27079753. doi: doi.org/10.1016/j.jalz.2016.02.006 Alzheimer's Disease Challenge website |
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KJ Gorgolewski, F Alfaro-Almagro, T Auer, P Bellec, M Capota, M Mallar Chakravarty, NW Churchill, RC Craddock, GA Devenyi, A Eklund, O Esteban, G Flandin, SS Ghosh, JS Guntupalli, M Jenkinson, A Keshavan, G Kiar, PR Raamana, D Raffelt, CJ Steele, P-O Quirion, RE Smith, SC Strother, G Varoquaux, T Yarkoni, Y Wang, RA Poldrack.
BIDS apps: Improving ease of use, accessibility, and reproducibility of neuroimaging data analysis methods. PLOS Computational Biology 13(3): e1005209 (2016). doi: 10.1371/journal.pcbi.1005209 |
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A Klein, S Ghosh.
Graph-based clinical diagnosis and prediction using multi-modal neuroimaging data (NIH proposal). Research Ideas and Outcomes. 2: e8835 (2016). doi: doi.org/10.3897/rio.2.e8835 |
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A Klein.
Brain Graph Interface (NIH proposal). Research Ideas and Outcomes. 2: e8817 (2016). doi: doi.org/10.3897/rio.2.e8817 |
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A Klein, SP Ellis.
Concurrence Topology: Finding High-Order Dependence in Neuropsychiatric Data (NIH proposal). Research Ideas and Outcomes. 2: e8815 (2016). doi: doi.org/10.3897/rio.2.e8815 SP Ellis, A Klein. "Concurrence Topology:" A New Method for Describing High-Order Statistical Dependence in Data. 31st International Symposium on Computational Geometry (Eindhover, the Netherlands) (2015). |
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BN Nichols, JB Poline, RA Poldrack, A Klein, D Kwon, W Chu, KM Pohl.
Implementing Semantics-Driven Data Exchange in Brain Science: The NCANDA Case Study. Big Data to Knowledge All Hands Grantee Meeting (2015). National Institutes of Health, Bethesda, MD. |
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DB Keator, J Poline, BN Nichols, SS Ghosh, C Maumet, KJ Gorgolewski, T Auer, C Craddock, G Chen, G Flandin, YO Halchenko, M Hanke, C Haselgrove, K Helmer, M Jenkinson, A Klein, L Lanyon, D Marcus, D Margulies, F Michel, TE Nichols, RA Poldrack, R Reynolds, Z Saad, T Schmah, J Steffener, JA Turner, JD Van Horn, S Das, DN Kennedy.
Standardizing Metadata in Brain Imaging. Front. Neurosci. Conference Abstract: Neuroinformatics 2015. doi: doi.org/10.3389/conf.fnins.2015.91.00004 Online presentation by David Keator. |
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A Klein, EC Neto, S Ghosh, ADNI.
Detailed shape analysis of healthy brains and brains with Alzheimer's disease. Human Brain Mapping 2015 (Honolulu, Hawaii). Abstract |
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SP Ellis, A Klein.
Describing high-order statistical dependence using "Concurrence Topology", with application to functional MRI brain data. Homology, Homotopy and Applications. 16(1): 245-264 (2014). doi: doi.org/10.4310/HHA.2014.v16.n1.a14 Earlier version on arXiv and poster Concurrence Topology website |
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A Klein, EN Neto, J Giard, F Bao, Y Hame, M Reuter, N Tustison, B Avants, J Tourville, H Dai, N Nichols, S Ghosh.
Shape analysis of 101 healthy human brains. Human Brain Mapping 2014 (Hamburg, Germany). |
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TJ Tustison, PA Cook, A Klein, G Song, SR Das, JT Duda, BM Kandel, N van Strien, JR Stone, JC Gee, BB Avants.
Large-scale evaluation of ANTs and FreeSurfer cortical thickness measurements. NeuroImage. 99:166-179 (2014). doi: doi.org/10.1016/j.neuroimage.2014.05.044 |
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DB Keator, SS Ghosh, C Maumet, G Flandin, BN Nichols, TE Nichols, GA Burns, R Bruehl, C Craddock, B Federick, K Gorgolewski, YO Halchenko, M Hanke, C Haselgrove, K Helmer, A Klein, D Marcus, M Milham, F Michel, R Poldrack, J Steffener, Y Schwartz, RM Stoner, JA Turner, DN Kennedy, J Poline.
Developing and using the data models for neuroimaging: the NIDASH Working Group. Front. Neuroinform. Conference Abstract: Neuroinformatics 2014. doi: doi.org/10.3389/conf.fninf.2014.18.00030 |
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S Ghosh, A Keshavan, J Salvatore, A Klein.
BIPS: A Framework for Curating and Executing Brain Imaging Pipelines. Front. Neuroinform. Conference Abstract: 5th INCF Congress of Neuroinformatics (2014). doi: doi.org/10.3389/conf.fninf.2014.08.00053 |
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A Klein, J Tourville.
101 labeled brain images and a consistent human cortical labeling protocol. Frontiers in Brain Imaging Methods. 6:171 (2012). doi: doi.org/10.3389/fnins.2012.00171 Supplementary website and Open Science Framework repository |
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J Tourville, A Klein.
101 labeled brains and a new human cortical labeling protocol. Neuroinformatics 2012 (Munich, Germany). |
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A Klein, FS Bao, Y Hame, E Stavsky, J Giard, D Haehn, N Nichols, SS Ghosh.
Mindboggle: Automated human brain MRI feature extraction, labeling, morphometry, and online visualization. Neuroinformatics 2012 (Munich, Germany). |
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FS Bao, SS Ghosh, J Giard, RV Parsey, A Klein.
Brain shape analysis for predicting treatment remission in major depressive disorder. 41st Annual Meeting for the Society for Neuroscience (2011). NOTE: The results did not hold up for a larger sample. |
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A Klein.
Mindboggle: an informatics framework for open research in quantifying the shape of the human brain. BioImage Informatics II (talk at Janelia Farm) (2011). |
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N Lee, A Klein.
A graph-based database of hierarchical brain features. Frontiers in Neuroinformatics (Neuroinformatics 2011). doi: doi.org/10.3389/conf.fninf.2011.08.00139 |
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F Bao, N Lee, Y Hame, K Im, D Riviere, G Li, A Klein.
Automated extraction of nested sulcal features from human brain MRI data. 17th Annual Meeting for the Organization of Human Brain Mapping (2011). GitHub repository |
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BB Avants, NJ Tustison, G Song, PA Cook, A Klein, JC Gee.
A reproducible evaluation of ANTs similarity metric performance in brain image registration. NeuroImage. 54(3): 2033-2044 (2011). PMCID: PMC3065962. |
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D Peruzzo, A Bertoldo, R Parsey, A Klein.
Automatic detection of corrupted volumes in DTI data. 28th Annual Meeting for the European Society for Magnetic Resonance in Medicine and Biology (2011). |
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N Lee, AF Laine, A Klein.
Towards a deep learning approach to brain parcellation. IEEE International Symposium on Biomedical Imaging: From Nano to Macro (2011):321-324. doi: doi.org/10.1109/ISBI.2011.5872414 |
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A Klein, T Dal Canton, SS Ghosh, B Landman, J Lee, A Worth.
Open labels: online feedback for a public resource of manually labeled brain images. 16th Annual Meeting for the Organization of Human Brain Mapping (2010). |
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B Avants, A Klein, N Tustison, J Woo, JC Gee.
Evaluation of open-access, automated brain extraction methods on multi-site multi-disorder data. 16th Annual Meeting for the Organization of Human Brain Mapping (2010). Synapse website |
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A Klein, SS Ghosh, B Avants, BTT Yeo, B Fischl, B Ardekani, JC Gee, JJ Mann, RV Parsey.
Evaluation of volume-based and surface-based brain image registration methods. NeuroImage. 51: 214-220 (2010). PMCID: PMC2862732. Synapse website |
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A Klein, SS Ghosh, B Avants, B Fischl, T Yeo, JJ Mann, RV Parsey.
An evaluation of volume- and surface-based nonlinear registration of human brain MRI data. 15th Annual Meeting for the Organization of Human Brain Mapping (2009). |
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A Klein, J Andersson, BA Ardekani, J Ashburner, B Avants, M-C Chiang, GE Christensen,
DL Collins, J Gee, P Hellier, JH Song, M Jenkinson, C Lepage, D Rueckert, P Thompson, T Vercauteren, RP Woods, JJ Mann, RV Parsey.
Evaluation of 14 nonlinear deformation algorithms applied to human brain MRI registration. NeuroImage. 46(3): 786-802 (2009). PMCID: PMC2747506 Synapse website |
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C DeLorenzo, A Klein, A Mikhno, N Gray, F Zanderigo, JJ Mann, RV Parsey.
A new method for assessing PET-MRI coregistration. Proc. SPIE - Medical Imaging. 7259, 72592W (2009). |
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A Klein, B Mensh, S Ghosh, J Tourville, J Hirsch.
Mindboggle: Automated brain labeling with multiple atlases. BMC Medical Imaging. 5:7 (2005). PMCID: PMC1283974 |
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A Klein, J Hirsch.
Mindboggle: A scatterbrained approach to automate brain labeling. NeuroImage. 24(2): 261-280 (2005). PMID: 15627570 Thesis: Automated brain labeling with Mindboggle |
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A Klein.
Activity patterns in the brain: breaking up the problem into pieces. International Conference on Complex Systems (2004) talk. |
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A Klein, J Hirsch.
Mindboggle: new developments in automated brain labeling. 9th Annual Meeting for the Organization of Human Brain Mapping (2003). |
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A Klein, J Hirsch.
Fully-automated nonlinear labeling of human brain activity. 8th Annual Meeting for the Organization of Human Brain Mapping (2002). |
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A Klein, J Hirsch.
Automatic labeling of brain anatomy and fMRI brain activity. 7th Annual Meeting for the Organization of Human Brain Mapping (2001). |
Open science |
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A Bafeta, J Bobe, J Clucas, P Gonsalves, C Gruson-Daniel, K Hudson, A Klein, A Krishnakumar, A McCollister-Slipp, A Lindner, D Misevic, J Naslund, C Nebeker, A Nikolaidis, I Pasquetto, G Sanchez, M Schapira, T Scheininger. Ten simple rules for human health research. PLOS Computational Biology 16(9): e1007846 (2020). https://doi.org/10.1371/journal.pcbi.1007846 |
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M Milham, A Klein. Be the change you seek in science BMC Biology. 17, Article number: 27 (2019). doi: doi.org/10.1186/s12915-019-0647-3 |
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MP Milham, RC Craddock, JJ Son, M Fleischmann, J Clucas, H Xu, B Koo, A Krishnakumar, BB Biswal, FX Castellanos, S Colcombe, A Di Martino, X-N Zuo, A Klein. Assessment of the impact of shared brain imaging data on the scientific literature Nature Communications. 9, Article number: 2818 (2018). doi: doi.org/10.1038/s41467-018-04976-1 (Nature Communications Editorial: Data sharing and the future of science) MP Milham, A Klein, C Craddock. Opinion: Share your data The Scientist (2017). |
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H Muller, J Kalpathy-Cramer, A Hanbury, K Farahani, R Sergeev, JH Paik, A Klein,
A Criminisi, A Trister, T Norman, D Kennedy, G Srinivasa, A Mamonov, N Preuss.
Report on the Cloud-Based Evaluation Approaches Workshop 2015. ACM SIGIR Forum. 50(1):35-41 (2015). Workshop Website |
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NJ Tustison, HJ Johnson, T Rohlfing, A Klein, SS Ghosh, L Ibanez, B Avants.
Instrumentation bias in the use and evaluation of scientific software: Recommendations for reproducible practices in the computational sciences. Frontiers in Brain Imaging Methods. 7:162 (2013). doi: doi.org/10.3389/fnins.2013.00162 |
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SS Ghosh, A Klein, B Avants, J Millman.
Learning from open source software projects to improve scientific review. Frontiers in Computational Neuroscience. 6:18 (2012). doi: doi.org/10.3389/fncom.2012.00018 |
Bees |
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BA Klein, M Stiegler, A Klein, Tautz J.
Mapping sleeping bees within their nest: spatial and temporal analysis of worker honey bee sleep. PLoS ONE. 9(7): e102316 (2014). doi: doi.org/10.1371/journal.pone.0102316 Harvard Dataverse |
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BA Klein, A Klein, MK Wray, UG Mueller, TD Seeley.
Sleep Deprivation impairs precision of waggle dance signaling in honey bees. Proceedings of the National Academy of Sciences. 107(52): 22705-22709 (2010). doi: doi.org/10.1073/pnas.1009439108 Nature News, New Scientist,... |
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BA Klein, KM Olzsowy, A Klein, KM Saunders, TD Seeley.
Caste-dependent sleep of worker honey bees. Journal of Experimental Biology. 211: 3028-3040 (2008). doi:10.1242/jeb.017426 Media coverage: Deutsches Bienen Journal, Dec. 2008. |